Tamlana carrageenivorans strain UJ94

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Pseudotamlana

Description

Tamlana carrageenivorans strain UJ94 is characterized by a single replicon, indicating a streamlined genomic structure suitable for its ecological niche. The strain is cataloged under the accession number NZ_CP025938.1, which provides a reference for its genetic material in microbial databases. This bacterium is notable for its ability to degrade carrageenan, a polysaccharide commonly found in red algae. This capability suggests that Tamlana carrageenivorans plays a significant role in the microbial ecology of marine environments, particularly in the breakdown of algal biomass. Such degradation processes are crucial for nutrient cycling and energy flow in coastal ecosystems, where algal blooms can impact local biodiversity and water quality. The single replicon structure may also imply a potential adaptation to specific environmental conditions, allowing for efficient resource utilization in its habitat. By participating in the decomposition of carrageenan, Tamlana carrageenivorans strain UJ94 not only contributes to the recycling of organic materials but also influences the dynamics of microbial communities associated with algae. In summary, Tamlana carrageenivorans strain UJ94, with its single replicon and carrageenan-degrading capabilities, exemplifies a specialized bacterium that contributes to the ecological balance in marine environments through the decomposition of algal polysaccharides.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPseudotamlana
SpeciesPseudotamlana carrageenivorans
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tamlana carrageenivorans strain UJ94 chromosome, complete genome.

Gene Summary

Adenine Count

1336167 bp

Thymine Count

1329418 bp

Guanine Count

724468 bp

Cytosine Count

726490 bp

Genome Length

4116543 bp

Protein-coding Genes

3521 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseC1A40_RS00180Not AvailablePositive31639 - 3246331802.8
t9ss type b sorting domain-containing proteinC1A40_RS00185Not AvailablePositive32491 - 3518199477.3
t9ss type b sorting domain-containing proteinC1A40_RS00190Not AvailablePositive35379 - 40280182088.0
excinuclease abc subunit uvrbC1A40_RS00195Not AvailablePositive40308 - 4231176955.8
hypothetical proteinC1A40_RS00200Not AvailableNegative42367 - 4278016096.5
duf1456 family proteinC1A40_RS00205Not AvailablePositive43128 - 433799685.99
fkbp-type peptidyl-prolyl cis-trans isomeraseC1A40_RS00210Not AvailableNegative43722 - 4467835672.8
rna-binding s4 domain-containing proteinC1A40_RS00215Not AvailablePositive44850 - 4523915423.3
phosphoribosyltransferase family proteinC1A40_RS00220Not AvailablePositive45278 - 4578118969.2
shikimate kinaseC1A40_RS00225Not AvailableNegative45773 - 4629419578.8

Displaying genes 131 – 140 of 3631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.