Escherichia coli strain YDC107

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain YDC107 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments. This strain is characterized by its mobility, facilitated by the presence of flagella, and typically occurs in pairs or as single cells. YDC107 has an optimal growth temperature of 37°C, indicating its mesophilic nature. This strain is host-associated and has been identified in a diverse range of hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), various mammals, and even some plants such as Solanum lycopersicum (tomatoes) and Brassica oleracea var. italica (broccoli). The wide host range suggests a significant ecological adaptability and potential for cross-species transmission. E. coli strain YDC107 is associated with various health effects in humans, including urinary tract infections (UTIs), gastrointestinal infections, and more severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). Its pathogenicity in humans underscores its role as a significant public health concern, particularly in foodborne infections and complications arising from urinary tract infections. The strain’s ability to inhabit multiple hosts and its association with a range of health issues highlights its ecological versatility and the potential for environmental interactions that may influence disease dynamics in both human and animal populations. Understanding the pathogenic mechanisms and ecological relationships of E. coli strain YDC107 can inform strategies for managing infections and mitigating risks associated with this bacterium.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain YDC107

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain YDC107
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain YDC107


Gene Summary

Adenine Count

1284644 bp

Thymine Count

1281806 bp

Guanine Count

1314426 bp

Cytosine Count

1317435 bp

Genome Length

5198311 bp

Protein-coding Genes

4571 genes

Non-Coding Genes

468 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail componentYDC107_RS00005Not AvailablePositive49 - 43714191.7
Tail componentYDC107_RS00010Not AvailablePositive430 - 300589256.2
Tail componentYDC107_RS00015Not AvailablePositive3002 - 333011709.5
Tail componentYDC107_RS00020Not AvailablePositive3330 - 402625342.6
Tail fiber componentYDC107_RS00025Not AvailablePositive4032 - 477825562.2
Tail componentYDC107_RS00030Not AvailablePositive4775 - 534620829.5
Putative tail tip assembly proteinYDC107_RS28280Not AvailablePositive5408 - 8886126127.0
Putative lom-like outer membrane proteinYDC107_RS00070Not AvailablePositive8954 - 955321343.7
Tail fiber proteinYDC107_RS00075Not AvailablePositive9618 - 1199582656.6
Hypothetical proteinYDC107_RS00080Not AvailablePositive11995 - 1227610708.5

Displaying genes 1 – 10 of 5039 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total