Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| terc family protein | YDC107_RS03155 | Not Available | Positive | 592154 - 593737 | 59402.8 |
| outer membrane assembly protein asma | YDC107_RS03160 | Not Available | Negative | 594011 - 595864 | 68932.9 |
| dctp deaminase | YDC107_RS03165 | Not Available | Negative | 595886 - 596467 | 21252.4 |
| uridine kinase | YDC107_RS03170 | Not Available | Negative | 596559 - 597200 | 24354.6 |
| diguanylate cyclase | YDC107_RS03175 | Not Available | Positive | 597518 - 600835 | 123970.0 |
| dna-3-methyladenine glycosylase 2 | YDC107_RS03180 | Not Available | Negative | 600873 - 601730 | 31639.3 |
| molecular chaperone | YDC107_RS03185 | Not Available | Positive | 601864 - 603216 | 49321.1 |
| protein kinase yegi | YDC107_RS03190 | Not Available | Negative | 603229 - 605169 | 71365.6 |
| yegj family protein | YDC107_RS03195 | Not Available | Positive | 605367 - 605828 | 17428.8 |
| protein-serine/threonine phosphatase pphc | YDC107_RS03200 | Not Available | Negative | 605893 - 606654 | 27384.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





