Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | YDC107_RS03005 | Not Available | Negative | 558144 - 559076 | 36342.2 |
| o102 family o-antigen polymerase | YDC107_RS03010 | Not Available | Negative | 559073 - 560203 | 43335.1 |
| hypothetical protein | YDC107_RS03015 | Not Available | Negative | 560184 - 561212 | 40171.6 |
| o102 family o-antigen flippase | YDC107_RS03020 | Not Available | Negative | 561206 - 562456 | 46148.9 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | YDC107_RS03025 | Not Available | Negative | 562463 - 563011 | 21066.1 |
| glucose-1-phosphate thymidylyltransferase rfba | YDC107_RS03030 | Not Available | Negative | 563016 - 563894 | 32484.2 |
| dtdp-4-dehydrorhamnose reductase | YDC107_RS03035 | Not Available | Negative | 563952 - 564851 | 32581.7 |
| dtdp-glucose 4,6-dehydratase | YDC107_RS03040 | Not Available | Negative | 564851 - 565936 | 40606.4 |
| utp--glucose-1-phosphate uridylyltransferase galf | YDC107_RS03045 | Not Available | Negative | 566308 - 567201 | 32806.2 |
| n-acetyl-alpha-d-glucosaminyl-diphospho-ditrans, octacis-undecaprenol 4-epimerase | YDC107_RS03050 | Not Available | Negative | 567433 - 568428 | 37158.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





