Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein yoei | YDC107_RS02905 | Not Available | Negative | 540986 - 541048 | 2241.66 |
| lysr substrate-binding domain-containing protein | YDC107_RS02910 | Not Available | Negative | 541263 - 542192 | 34152.0 |
| sdr family oxidoreductase | YDC107_RS02915 | Not Available | Negative | 542238 - 543062 | 29709.8 |
| type ii toxin-antitoxin system mrna interferase toxin yoeb | YDC107_RS02920 | Not Available | Negative | 543145 - 543399 | 10216.1 |
| yoeb-yefm toxin-antitoxin system antitoxin yefm | YDC107_RS02925 | Not Available | Negative | 543396 - 543647 | 9308.13 |
| his operon leader peptide | YDC107_RS02930 | Not Available | Positive | 543930 - 543980 | 2081.43 |
| atp phosphoribosyltransferase | YDC107_RS02935 | Not Available | Positive | 544126 - 545025 | 33315.7 |
| histidinol dehydrogenase | YDC107_RS02940 | Not Available | Positive | 545031 - 546335 | 46107.8 |
| histidinol-phosphate transaminase | YDC107_RS02945 | Not Available | Positive | 546332 - 547402 | 39376.4 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | YDC107_RS02950 | Not Available | Positive | 547402 - 548469 | 40276.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





