Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphotriesterase-related protein | YDC107_RS02670 | Not Available | Positive | 506351 - 507385 | 37768.2 |
| s49 family peptidase | YDC107_RS02675 | Not Available | Negative | 507425 - 507717 | 11410.1 |
| s49 family peptidase | YDC107_RS02680 | Not Available | Negative | 507797 - 509416 | 61476.9 |
| zinc-ribbon domain-containing protein | YDC107_RS02685 | Not Available | Negative | 509700 - 510107 | 15436.4 |
| putative zinc ribbon protein | YDC107_RS02690 | Not Available | Negative | 510095 - 510496 | 15635.3 |
| inovirus gp2 family protein | YDC107_RS02695 | Not Available | Negative | 510756 - 511325 | 21842.2 |
| hypothetical protein | YDC107_RS28720 | Not Available | Positive | 511525 - 511722 | 7243.05 |
| is66-like element accessory protein tnpa | YDC107_RS02710 | Not Available | Positive | 512560 - 512985 | 15906.0 |
| is66 family insertion sequence element accessory protein tnpb | YDC107_RS02715 | Not Available | Positive | 512982 - 513332 | 13161.0 |
| is66-like element isec23 family transposase | YDC107_RS02720 | Not Available | Positive | 513363 - 514976 | 61275.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





