Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase | YDC107_RS02620 | Not Available | Negative | 497918 - 498853 | 34544.3 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | YDC107_RS02625 | Not Available | Negative | 498915 - 499994 | 36989.3 |
| adenosylcobinamide-gdp ribazoletransferase | YDC107_RS02630 | Not Available | Negative | 500006 - 500749 | 26387.3 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | YDC107_RS02635 | Not Available | Negative | 500746 - 501291 | 20165.2 |
| s49 family peptidase | YDC107_RS28305 | Not Available | Negative | 501443 - 501616 | 6258.43 |
| s49 family peptidase | YDC107_RS28310 | Not Available | Negative | 501595 - 501783 | 6970.55 |
| s49 family peptidase | YDC107_RS02650 | Not Available | Positive | 502808 - 503146 | 12500.6 |
| s49 family peptidase | YDC107_RS02655 | Not Available | Positive | 503342 - 504555 | 46140.1 |
| s49 family peptidase | YDC107_RS02660 | Not Available | Positive | 504569 - 505326 | 27243.2 |
| s49 family peptidase | YDC107_RS28315 | Not Available | Positive | 505383 - 506348 | 34044.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





