Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Truncated transposase | YDC107_RS00380 | Not Available | Positive | 55933 - 56337 | 15225.4 |
| Transposase | YDC107_RS00385 | Not Available | Positive | 56334 - 56681 | 12797.9 |
| Transposase | YDC107_RS00390 | Not Available | Positive | 56730 - 58269 | 57587.8 |
| Hypothetical protein | YDC107_RS28715 | Not Available | Negative | 58340 - 58522 | 6823.63 |
| Methyltransferase | YDC107_RS00395 | Not Available | Negative | 58652 - 59141 | 18603.4 |
| Lygf | YDC107_RS00400 | Not Available | Negative | 59138 - 59560 | 16256.5 |
| Replication protein | YDC107_RS00405 | Not Available | Negative | 59601 - 60566 | 36962.9 |
| toxin ydat family protein | YDC107_RS00410 | Not Available | Negative | 60547 - 61068 | 19925.9 |
| Putative cro anti-repressor | YDC107_RS00415 | Not Available | Negative | 61052 - 61282 | 8578.22 |
| Putative transcriptional repressor dica | YDC107_RS00420 | Not Available | Positive | 61366 - 61773 | 15656.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





