Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-amylase | YDC107_RS02235 | Not Available | Positive | 417952 - 419439 | 56589.2 |
| lipoprotein yedd | YDC107_RS02240 | Not Available | Negative | 419473 - 419886 | 14960.0 |
| selenium metabolism membrane protein yede/fdht | YDC107_RS02245 | Not Available | Positive | 420073 - 421278 | 44413.5 |
| sulfurtransferase-like selenium metabolism protein yedf | YDC107_RS02250 | Not Available | Positive | 421275 - 421508 | 8639.5 |
| s49 family peptidase | YDC107_RS02255 | Not Available | Positive | 421617 - 422039 | 16245.1 |
| s49 family peptidase | YDC107_RS02260 | Not Available | Negative | 422041 - 422325 | 11339.6 |
| is200/is605 family transposase | YDC107_RS02265 | Not Available | Positive | 422348 - 422872 | 20007.3 |
| helix-turn-helix transcriptional regulator | YDC107_RS02270 | Not Available | Negative | 423029 - 423826 | 30767.4 |
| raf kinase inhibitor-like protein ybcl | YDC107_RS02275 | Not Available | Negative | 423836 - 424387 | 19391.8 |
| multidrug efflux smr transporter emre | YDC107_RS02280 | Not Available | Negative | 424556 - 424888 | 11915.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





