Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein dd-endopeptidase mepm | YDC107_RS01885 | Not Available | Negative | 353753 - 355075 | 49060.6 |
| zinc abc transporter substrate-binding protein znua | YDC107_RS01890 | Not Available | Negative | 355091 - 356023 | 33904.4 |
| zinc abc transporter atp-binding protein znuc | YDC107_RS01895 | Not Available | Positive | 356102 - 356857 | 27927.3 |
| zinc abc transporter permease subunit znub | YDC107_RS01900 | Not Available | Positive | 356854 - 357639 | 27792.5 |
| holliday junction branch migration dna helicase ruvb | YDC107_RS01905 | Not Available | Negative | 357789 - 358799 | 37174.1 |
| holliday junction branch migration protein ruva | YDC107_RS01910 | Not Available | Negative | 358808 - 359419 | 22087.0 |
| stress response small protein yobi | YDC107_RS01915 | Not Available | Negative | 359558 - 359623 | 2639.39 |
| yebb family permuted papain-like enzyme | YDC107_RS01920 | Not Available | Positive | 359694 - 360296 | 22695.1 |
| crossover junction endodeoxyribonuclease ruvc | YDC107_RS01925 | Not Available | Negative | 360298 - 360819 | 18747.9 |
| yebc/pmpr family dna-binding transcriptional regulator | YDC107_RS01930 | Not Available | Negative | 360854 - 361594 | 26438.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





