Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s dicluster domain-containing protein | YDC107_RS00945 | Not Available | Negative | 165113 - 165781 | 25110.0 |
| ydhw family putative oxidoreductase system protein | YDC107_RS00950 | Not Available | Negative | 165845 - 166483 | 24126.4 |
| aldehyde ferredoxin oxidoreductase | YDC107_RS00955 | Not Available | Negative | 166496 - 168598 | 77852.7 |
| ferredoxin-like protein | YDC107_RS00960 | Not Available | Negative | 168619 - 169245 | 22369.1 |
| fumarate hydratase fumd | YDC107_RS00965 | Not Available | Negative | 169701 - 169910 | 7907.85 |
| protein ynhh | YDC107_RS28300 | Not Available | Positive | 170285 - 170479 | 7582.04 |
| pyruvate kinase pykf | YDC107_RS00970 | Not Available | Positive | 170487 - 171899 | 50732.5 |
| murein lipoprotein lpp | YDC107_RS00975 | Not Available | Positive | 172210 - 172446 | 8323.95 |
| l,d-transpeptidase ldte | YDC107_RS00980 | Not Available | Negative | 172510 - 173514 | 36026.4 |
| cysteine desulfuration protein sufe | YDC107_RS00985 | Not Available | Negative | 173663 - 174079 | 15801.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





