Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclopropane fatty acyl phospholipid synthase | YDC107_RS00895 | Not Available | Positive | 156179 - 157327 | 43892.3 |
| riboflavin synthase | YDC107_RS00900 | Not Available | Negative | 157367 - 158008 | 23446.3 |
| multidrug efflux mate transporter mdtk | YDC107_RS00905 | Not Available | Positive | 158223 - 159596 | 49433.2 |
| aida repeat-containing protein | YDC107_RS00910 | Not Available | Negative | 159637 - 160893 | 42750.5 |
| Trna-val | Not Available | Not Available | Positive | 161202 - 161278 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 161283 - 161359 | Not Available |
| monooxygenase | YDC107_RS00925 | Not Available | Positive | 161468 - 161773 | 11288.5 |
| fad-nad(p)-binding protein | YDC107_RS00930 | Not Available | Positive | 161899 - 163503 | 60717.6 |
| protein ydht | YDC107_RS00935 | Not Available | Negative | 163515 - 164327 | 29359.3 |
| thiosulfate reductase cytochrome b subunit | YDC107_RS00940 | Not Available | Negative | 164331 - 165116 | 29363.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





