Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trans-aconitate 2-methyltransferase | YDC107_RS25085 | Not Available | Positive | 5146257 - 5147015 | 29010.3 |
| s49 family peptidase | YDC107_RS25090 | Not Available | Negative | 5147019 - 5147933 | 34723.9 |
| tagaturonate reductase | YDC107_RS25095 | Not Available | Negative | 5148130 - 5149581 | 54801.3 |
| diguanylate cyclase | YDC107_RS25100 | Not Available | Negative | 5149809 - 5151227 | 52005.2 |
| duf4186 domain-containing protein | YDC107_RS25105 | Not Available | Negative | 5151366 - 5151725 | 13427.4 |
| glutaminase b | YDC107_RS25110 | Not Available | Negative | 5151725 - 5152651 | 33517.6 |
| succinate-semialdehyde dehydrogenase | YDC107_RS25115 | Not Available | Negative | 5152715 - 5154103 | 49679.6 |
| putrescine utilization regulator ptrr | YDC107_RS25120 | Not Available | Positive | 5154204 - 5155079 | 32158.5 |
| putative protein ynek | YDC107_RS25125 | Not Available | Positive | 5155163 - 5156278 | 42931.8 |
| l-arabinose mfs transporter | YDC107_RS25130 | Not Available | Positive | 5156428 - 5157618 | 42574.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





