Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h-dependent oxidoreductase | YDC107_RS24990 | Not Available | Negative | 5123800 - 5124372 | 21262.4 |
| amidohydrolase family protein | YDC107_RS24995 | Not Available | Negative | 5124523 - 5125086 | 21288.0 |
| hypothetical protein | YDC107_RS28530 | Not Available | Negative | 5125046 - 5125201 | 5643.81 |
| aldo/keto reductase | YDC107_RS25000 | Not Available | Negative | 5125304 - 5126251 | 34216.0 |
| type 1 glutamine amidotransferase domain-containing protein | YDC107_RS25005 | Not Available | Negative | 5126325 - 5127014 | 24788.1 |
| hypothetical protein | YDC107_RS25010 | Not Available | Negative | 5127023 - 5127331 | 11512.9 |
| lysr family transcriptional regulator | YDC107_RS25015 | Not Available | Positive | 5127470 - 5128369 | 33868.1 |
| s49 family peptidase | YDC107_RS28200 | Not Available | Positive | 5128736 - 5129033 | 11186.6 |
| sir2 family nad-dependent protein deacylase | YDC107_RS25020 | Not Available | Positive | 5129274 - 5130239 | 36699.0 |
| hipa n-terminal domain-containing protein | YDC107_RS25025 | Not Available | Negative | 5130439 - 5131134 | 25775.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





