Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fimbrial protein | YDC107_RS24930 | Not Available | Negative | 5113654 - 5114568 | 32058.4 |
| fimbrial protein | YDC107_RS24935 | Not Available | Negative | 5114628 - 5115131 | 18175.5 |
| fimbrial protein | YDC107_RS24940 | Not Available | Negative | 5115144 - 5115674 | 18935.6 |
| fimbria/pilus outer membrane usher protein | YDC107_RS24945 | Not Available | Negative | 5115688 - 5118339 | 96722.4 |
| fimbria/pilus periplasmic chaperone | YDC107_RS24950 | Not Available | Negative | 5118381 - 5119091 | 26121.8 |
| type 1 fimbrial major subunit fima | YDC107_RS24955 | Not Available | Negative | 5119452 - 5120015 | 19145.6 |
| s49 family peptidase | YDC107_RS24965 | Not Available | Negative | 5120449 - 5120715 | 10444.6 |
| carboxymuconolactone decarboxylase family protein | YDC107_RS24970 | Not Available | Negative | 5121118 - 5121921 | 28734.2 |
| putative quinol monooxygenase | YDC107_RS24975 | Not Available | Negative | 5121937 - 5122632 | 26650.8 |
| aldo/keto reductase | YDC107_RS24985 | Not Available | Negative | 5122778 - 5123797 | 37848.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





