Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | YDC107_RS24825 | Not Available | Negative | 5084136 - 5085122 | 36002.9 |
| d,d-dipeptide abc transporter permease | YDC107_RS24830 | Not Available | Negative | 5085119 - 5086015 | 32016.0 |
| abc transporter permease | YDC107_RS24835 | Not Available | Negative | 5086012 - 5087034 | 37370.3 |
| abc transporter substrate-binding protein | YDC107_RS24840 | Not Available | Negative | 5087036 - 5088586 | 57676.3 |
| d-alanyl-d-alanine dipeptidase | YDC107_RS24845 | Not Available | Negative | 5088600 - 5089181 | 21282.3 |
| oxygen-sensing cyclic-di-gmp phosphodiesterase dosp | YDC107_RS24850 | Not Available | Negative | 5089439 - 5091838 | 90279.6 |
| diguanylate cyclase dosc | YDC107_RS24855 | Not Available | Negative | 5091863 - 5093245 | 53182.7 |
| family 10 glycosylhydrolase | YDC107_RS24860 | Not Available | Negative | 5093622 - 5094941 | 49587.8 |
| is200/is605-like element is200c family transposase | YDC107_RS24865 | Not Available | Negative | 5095128 - 5095586 | 18028.0 |
| acid resistance gamma-aminobutyrate antiporter gadc | YDC107_RS24870 | Not Available | Negative | 5095783 - 5097318 | 55051.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





