Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| respiratory nitrate reductase subunit gamma | YDC107_RS24725 | Not Available | Negative | 5061099 - 5061779 | 26088.6 |
| nitrate reductase molybdenum cofactor assembly chaperone | YDC107_RS24730 | Not Available | Negative | 5061776 - 5062471 | 26183.0 |
| nitrate reductase subunit beta | YDC107_RS24735 | Not Available | Negative | 5062471 - 5064015 | 58508.0 |
| nitrate reductase z subunit alpha | YDC107_RS24740 | Not Available | Negative | 5064012 - 5067752 | 140124.0 |
| nitrate/nitrite transporter naru | YDC107_RS24745 | Not Available | Negative | 5067847 - 5069235 | 49913.1 |
| s49 family peptidase | YDC107_RS24750 | Not Available | Negative | 5069547 - 5070239 | 26451.5 |
| s49 family peptidase | YDC107_RS24755 | Not Available | Negative | 5070227 - 5070514 | 10647.5 |
| porin ompc | YDC107_RS24760 | Not Available | Negative | 5070678 - 5071778 | 40982.4 |
| aromatic amino acid efflux dmt transporter yddg | YDC107_RS24765 | Not Available | Negative | 5072037 - 5072918 | 31562.4 |
| formate dehydrogenase-n subunit alpha | YDC107_RS24770 | Not Available | Positive | 5073150 - 5076197 | 112724.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





