Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system tip protein vgrg | YDC107_RS24670 | Not Available | Positive | 5047029 - 5049137 | 78680.8 |
| s49 family peptidase | YDC107_RS24675 | Not Available | Positive | 5049204 - 5053432 | 149082.0 |
| hypothetical protein | YDC107_RS24680 | Not Available | Positive | 5053433 - 5053831 | 15090.2 |
| s49 family peptidase | YDC107_RS24690 | Not Available | Positive | 5054137 - 5054657 | 19991.1 |
| diguanylate cyclase | YDC107_RS24695 | Not Available | Negative | 5054762 - 5055811 | 39169.0 |
| alkyl/aryl-sulfatase | YDC107_RS24700 | Not Available | Negative | 5055906 - 5057882 | 72727.9 |
| tautomerase ppta | YDC107_RS24705 | Not Available | Positive | 5058188 - 5058415 | 8504.22 |
| flavin reductase family protein | YDC107_RS24710 | Not Available | Negative | 5058419 - 5058988 | 20910.1 |
| n-hydroxyarylamine o-acetyltransferase | YDC107_RS24715 | Not Available | Positive | 5059163 - 5060008 | 32216.4 |
| phzf family isomerase | YDC107_RS24720 | Not Available | Negative | 5060127 - 5061020 | 32238.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





