Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome b561 | YDC107_RS24475 | Not Available | Positive | 5010285 - 5010815 | 20245.7 |
| hypothetical protein | YDC107_RS24480 | Not Available | Positive | 5011060 - 5011233 | 5764.08 |
| hypothetical protein | YDC107_RS28190 | Not Available | Positive | 5011259 - 5011327 | 2428.15 |
| type i toxin-antitoxin system toxin hokb | YDC107_RS24485 | Not Available | Negative | 5011305 - 5011454 | 5645.21 |
| methyl-accepting chemotaxis protein trg | YDC107_RS24490 | Not Available | Positive | 5011853 - 5013493 | 58884.3 |
| lysr substrate-binding domain-containing protein | YDC107_RS24495 | Not Available | Negative | 5013531 - 5014454 | 33375.5 |
| voc family protein | YDC107_RS24500 | Not Available | Positive | 5014671 - 5016014 | 51091.6 |
| glucan biosynthesis protein opgd | YDC107_RS24505 | Not Available | Positive | 5016239 - 5017894 | 62819.2 |
| ydch family protein | YDC107_RS24510 | Not Available | Positive | 5018034 - 5018258 | 8878.79 |
| 50s ribosomal protein l7/l12-serine acetyltransferase | YDC107_RS24515 | Not Available | Positive | 5018321 - 5018860 | 20656.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





