Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-lactate dehydrogenase | YDC107_RS24380 | Not Available | Negative | 4981163 - 4982152 | 36522.8 |
| ydbh family protein | YDC107_RS24385 | Not Available | Positive | 4982360 - 4984999 | 96913.3 |
| ynbe family lipoprotein | YDC107_RS24390 | Not Available | Positive | 4984996 - 4985181 | 6840.53 |
| ydbl family protein | YDC107_RS24395 | Not Available | Positive | 4985189 - 4985512 | 12009.8 |
| autotransporter domain-containing protein | YDC107_RS28185 | Not Available | Positive | 4985914 - 4991994 | 208328.0 |
| pyridoxine 4-dehydrogenase | YDC107_RS24405 | Not Available | Positive | 4992202 - 4993062 | 30780.8 |
| duf2773 domain-containing bactofilin | YDC107_RS24410 | Not Available | Positive | 4993126 - 4995432 | 86545.0 |
| cdp-alcohol phosphatidyltransferase family protein | YDC107_RS24415 | Not Available | Positive | 4995603 - 4996208 | 22599.5 |
| s49 family peptidase | YDC107_RS24420 | Not Available | Positive | 4996208 - 4997104 | 32790.5 |
| bifunctional alpha/beta hydrolase/class i sam-dependent methyltransferase | YDC107_RS24425 | Not Available | Positive | 4997120 - 4998877 | 65564.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





