Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YDC107_RS24330 | Not Available | Negative | 4969193 - 4969987 | 29889.4 |
| iron/manganese abc transporter permease subunit sitd | YDC107_RS24335 | Not Available | Negative | 4970460 - 4971317 | 30748.0 |
| iron/manganese abc transporter permease subunit sitc | YDC107_RS24340 | Not Available | Negative | 4971314 - 4972171 | 30815.6 |
| iron/manganese abc transporter atp-binding protein sitb | YDC107_RS24345 | Not Available | Negative | 4972168 - 4972995 | 30071.4 |
| iron/manganese abc transporter substrate-binding protein sita | YDC107_RS24350 | Not Available | Negative | 4972995 - 4973909 | 33560.3 |
| universal stress protein uspf | YDC107_RS24355 | Not Available | Negative | 4974494 - 4974928 | 15959.4 |
| porin ompn | YDC107_RS24360 | Not Available | Negative | 4975069 - 4976202 | 41173.9 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | YDC107_RS24365 | Not Available | Negative | 4976569 - 4980093 | 128901.0 |
| duf333 domain-containing protein | YDC107_RS24370 | Not Available | Positive | 4980367 - 4980633 | 8696.44 |
| heat shock protein hslj | YDC107_RS24375 | Not Available | Negative | 4980630 - 4981052 | 15165.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





