Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| stress response translation initiation inhibitor ycih | YDC107_RS23635 | Not Available | Positive | 4839694 - 4840020 | 11420.0 |
| osmotically-inducible lipoprotein osmb | YDC107_RS23640 | Not Available | Negative | 4840146 - 4840364 | 6948.51 |
| dna-binding transcriptional regulator ycit | YDC107_RS23645 | Not Available | Negative | 4840633 - 4841382 | 27590.2 |
| protein yciz | YDC107_RS23650 | Not Available | Negative | 4841472 - 4841645 | 6441.71 |
| protein ymid | YDC107_RS28170 | Not Available | Positive | 4841682 - 4841810 | 5077.28 |
| cyclic di-gmp phosphodiesterase | YDC107_RS23655 | Not Available | Negative | 4841792 - 4843777 | 74784.4 |
| hypothetical protein | YDC107_RS23660 | Not Available | Positive | 4843831 - 4843935 | 4122.21 |
| exoribonuclease ii | YDC107_RS23665 | Not Available | Negative | 4844012 - 4845946 | 72466.7 |
| carboxymuconolactone decarboxylase family protein | YDC107_RS23670 | Not Available | Negative | 4846014 - 4847141 | 42212.2 |
| enoyl-acp reductase fabi | YDC107_RS23675 | Not Available | Negative | 4847285 - 4848073 | 27879.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





