Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator cysb | YDC107_RS23585 | Not Available | Positive | 4830894 - 4831868 | 36152.5 |
| ymia family putative membrane protein | YDC107_RS23590 | Not Available | Positive | 4832187 - 4832327 | 5337.71 |
| protein ycix | YDC107_RS23595 | Not Available | Positive | 4832330 - 4832497 | 6334.2 |
| small membrane protein ymic | YDC107_RS23600 | Not Available | Positive | 4832611 - 4832706 | 3822.77 |
| aconitate hydratase acna | YDC107_RS23605 | Not Available | Positive | 4832870 - 4835545 | 97781.9 |
| gtp cyclohydrolase ii | YDC107_RS23610 | Not Available | Negative | 4835609 - 4836199 | 21837.3 |
| phosphatidylglycerophosphatase b | YDC107_RS23615 | Not Available | Positive | 4836369 - 4837133 | 29020.9 |
| lipopolysaccharide assembly protein lapa | YDC107_RS23620 | Not Available | Positive | 4837282 - 4837590 | 11324.1 |
| lipopolysaccharide assembly protein lapb | YDC107_RS23625 | Not Available | Positive | 4837597 - 4838766 | 44533.6 |
| orotidine-5'-phosphate decarboxylase | YDC107_RS23630 | Not Available | Positive | 4838957 - 4839694 | 26275.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





