Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| general stress protein | YDC107_RS23485 | Not Available | Negative | 4809633 - 4809812 | 6002.69 |
| tryptophan synthase subunit alpha | YDC107_RS23490 | Not Available | Negative | 4810193 - 4810999 | 28727.8 |
| tryptophan synthase subunit beta | YDC107_RS23495 | Not Available | Negative | 4810999 - 4812192 | 43000.6 |
| bifunctional indole-3-glycerol-phosphate synthase trpc/phosphoribosylanthranilate isomerase trpf | YDC107_RS23500 | Not Available | Negative | 4812204 - 4813565 | 49411.1 |
| bifunctional anthranilate synthase glutamate amidotransferase component trpg/anthranilate phosphoribosyltransferase trpd | YDC107_RS23505 | Not Available | Negative | 4813566 - 4815161 | 56903.4 |
| anthranilate synthase component i | YDC107_RS23510 | Not Available | Negative | 4815161 - 4816723 | 57448.6 |
| trp operon leader peptide | YDC107_RS23515 | Not Available | Negative | 4816815 - 4816859 | 1723.19 |
| rnase rnm | YDC107_RS23520 | Not Available | Positive | 4816997 - 4817878 | 32627.8 |
| l-threonylcarbamoyladenylate synthase | YDC107_RS23525 | Not Available | Positive | 4817875 - 4818495 | 23213.2 |
| duf2207 domain-containing protein | YDC107_RS23530 | Not Available | Positive | 4818523 - 4820406 | 71097.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





