Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anti-adapter protein iram | YDC107_RS22890 | Not Available | Negative | 4695595 - 4695918 | 12179.0 |
| protein ymgk | YDC107_RS28150 | Not Available | Negative | 4696179 - 4696223 | 1589.03 |
| is1-like element is1a family transposase | YDC107_RS22895 | Not Available | Positive | 4696486 - 4697183 | 26455.2 |
| hypothetical protein | YDC107_RS22900 | Not Available | Negative | 4697238 - 4697348 | 4373.54 |
| duf1398 domain-containing protein | YDC107_RS22905 | Not Available | Negative | 4697401 - 4697805 | 15854.0 |
| dna-binding transcriptional repressor blur | YDC107_RS22910 | Not Available | Negative | 4698026 - 4698757 | 28220.1 |
| blue light-responsive regulator bluf | YDC107_RS22915 | Not Available | Negative | 4698962 - 4700173 | 45238.5 |
| regulatory protein ycgz | YDC107_RS22920 | Not Available | Positive | 4700487 - 4700723 | 8720.46 |
| hypothetical protein | YDC107_RS22925 | Not Available | Positive | 4700766 - 4701038 | 10398.6 |
| biofilm/acid-resistance regulator arir | YDC107_RS22930 | Not Available | Positive | 4701067 - 4701333 | 9710.59 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





