Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein-releasing abc transporter atp-binding protein lold | YDC107_RS22450 | Not Available | Positive | 4626655 - 4627356 | 25439.9 |
| lipoprotein-releasing abc transporter permease subunit lole | YDC107_RS22455 | Not Available | Positive | 4627356 - 4628600 | 45338.0 |
| n-acetylglucosamine kinase | YDC107_RS22460 | Not Available | Positive | 4628629 - 4629540 | 33044.7 |
| sir2 family nad+-dependent deacetylase | YDC107_RS22465 | Not Available | Positive | 4629556 - 4630377 | 30938.2 |
| tpm domain-containing protein | YDC107_RS22470 | Not Available | Negative | 4630514 - 4631299 | 28664.2 |
| duf3592 domain-containing protein | YDC107_RS22475 | Not Available | Negative | 4631296 - 4631757 | 17473.9 |
| spermidine/putrescine abc transporter substrate-binding protein potd | YDC107_RS22480 | Not Available | Negative | 4631815 - 4632861 | 38855.0 |
| spermidine/putrescine abc transporter permease potc | YDC107_RS22485 | Not Available | Negative | 4632858 - 4633652 | 29112.7 |
| peptidase t | YDC107_RS22830 | Not Available | Positive | 4683449 - 4684675 | 44926.1 |
| [50s ribosomal protein l16]-arginine 3-hydroxylase | YDC107_RS22835 | Not Available | Negative | 4684724 - 4685845 | 42581.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





