Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| poly-beta-1,6-n-acetyl-d-glucosamine synthase | YDC107_RS22000 | Not Available | Negative | 4538271 - 4539596 | 50738.6 |
| poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase pgab | YDC107_RS22005 | Not Available | Negative | 4539589 - 4541607 | 77446.8 |
| poly-beta-1,6 n-acetyl-d-glucosamine export porin pgaa | YDC107_RS22010 | Not Available | Negative | 4541616 - 4544039 | 92333.0 |
| ggdef domain-containing protein | YDC107_RS22015 | Not Available | Positive | 4544631 - 4545998 | 52125.9 |
| Trna-ser | Not Available | Not Available | Positive | 4546103 - 4546190 | Not Available |
| glyoxylate/hydroxypyruvate reductase ghra | YDC107_RS22025 | Not Available | Positive | 4546424 - 4547362 | 35371.4 |
| zinc-binding phosphatase | YDC107_RS22030 | Not Available | Positive | 4547417 - 4548154 | 26833.9 |
| molecular chaperone ycdy | YDC107_RS22035 | Not Available | Positive | 4548178 - 4548732 | 20725.4 |
| duf1097 domain-containing protein | YDC107_RS22040 | Not Available | Positive | 4548834 - 4549325 | 17104.5 |
| curli production assembly/transport protein csgg | YDC107_RS22045 | Not Available | Negative | 4549389 - 4550222 | 30559.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





