Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrimidine utilization protein a | YDC107_RS21950 | Not Available | Negative | 4524502 - 4525593 | 39976.4 |
| hth-type transcriptional regulator rutr | YDC107_RS21955 | Not Available | Positive | 4525881 - 4526519 | 23688.9 |
| trifunctional transcriptional regulator/proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase | YDC107_RS21960 | Not Available | Negative | 4526559 - 4530521 | 143727.0 |
| hypothetical protein | YDC107_RS21965 | Not Available | Positive | 4530576 - 4530785 | 7779.91 |
| sodium/proline symporter putp | YDC107_RS21970 | Not Available | Positive | 4530944 - 4532452 | 54354.3 |
| iron uptake transporter permease efeu | YDC107_RS21975 | Not Available | Positive | 4533106 - 4533936 | 30345.7 |
| iron uptake system protein efeo | YDC107_RS21980 | Not Available | Positive | 4533994 - 4535121 | 41125.9 |
| iron uptake transporter deferrochelatase/peroxidase subunit | YDC107_RS21985 | Not Available | Positive | 4535127 - 4536398 | 46743.7 |
| phosphate starvation-inducible protein phoh | YDC107_RS21990 | Not Available | Positive | 4537018 - 4537806 | 29351.5 |
| poly-beta-1,6-n-acetyl-d-glucosamine biosynthesis protein pgad | YDC107_RS21995 | Not Available | Negative | 4537856 - 4538269 | 16169.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





