Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome bd-ii oxidase subunit 1 | YDC107_RS21800 | Not Available | Positive | 4497227 - 4498771 | 57996.3 |
| cytochrome d ubiquinol oxidase subunit ii | YDC107_RS21805 | Not Available | Positive | 4498783 - 4499919 | 42426.4 |
| cytochrome bd-ii oxidase subunit cbdx | YDC107_RS21810 | Not Available | Positive | 4499932 - 4500024 | 3597.68 |
| bifunctional acid phosphatase/4-phytase | YDC107_RS21815 | Not Available | Positive | 4500104 - 4501414 | 47560.1 |
| cold shock-like protein csph | YDC107_RS21820 | Not Available | Negative | 4501402 - 4501614 | 7720.48 |
| cold shock protein cspg | YDC107_RS21825 | Not Available | Positive | 4501900 - 4502112 | 7781.14 |
| cold-shock protein | YDC107_RS21830 | Not Available | Positive | 4502123 - 4502311 | 7104.55 |
| protein ymce | YDC107_RS21835 | Not Available | Positive | 4502286 - 4502516 | 8674.59 |
| gnsa/gnsb family addiction module toxin | YDC107_RS21840 | Not Available | Positive | 4502506 - 4502679 | 6575.99 |
| 4fe-4s binding protein | YDC107_RS21845 | Not Available | Negative | 4502727 - 4503800 | 40080.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





