Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-manno-octulosonate cytidylyltransferase | YDC107_RS21500 | Not Available | Positive | 4430515 - 4431261 | 27617.1 |
| ycbj family phosphotransferase | YDC107_RS21505 | Not Available | Positive | 4431415 - 4432308 | 34489.6 |
| envelope biogenesis factor elyc | YDC107_RS21510 | Not Available | Negative | 4432285 - 4433064 | 28624.0 |
| trna uridine 5-oxyacetic acid(34) methyltransferase cmom | YDC107_RS21515 | Not Available | Positive | 4433200 - 4433985 | 29816.0 |
| chromosome partition protein mukf | YDC107_RS21520 | Not Available | Positive | 4433982 - 4435304 | 50581.7 |
| chromosome partition protein muke | YDC107_RS21525 | Not Available | Positive | 4435285 - 4435989 | 26949.0 |
| chromosome partition protein mukb | YDC107_RS21530 | Not Available | Positive | 4435989 - 4440449 | 170141.0 |
| l,d-transpeptidase | YDC107_RS21535 | Not Available | Positive | 4440710 - 4442557 | 67820.2 |
| ycbk family protein | YDC107_RS21540 | Not Available | Positive | 4442738 - 4443286 | 20355.6 |
| hydroxyacylglutathione hydrolase gloc | YDC107_RS21545 | Not Available | Positive | 4443313 - 4443960 | 23699.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





