Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoshikimate 1-carboxyvinyltransferase | YDC107_RS21450 | Not Available | Positive | 4418475 - 4419758 | 46175.7 |
| metallopeptidase ycal | YDC107_RS21455 | Not Available | Positive | 4419928 - 4420692 | 26778.7 |
| (d)cmp kinase | YDC107_RS21460 | Not Available | Positive | 4420865 - 4421548 | 24775.8 |
| 30s ribosomal protein s1 | YDC107_RS21465 | Not Available | Positive | 4421659 - 4423332 | 61161.5 |
| integration host factor subunit beta | YDC107_RS21470 | Not Available | Positive | 4423492 - 4423776 | 10651.8 |
| comec family protein | YDC107_RS21475 | Not Available | Positive | 4423983 - 4426247 | 84530.9 |
| lipid a abc transporter atp-binding protein/permease msba | YDC107_RS21480 | Not Available | Positive | 4426284 - 4428032 | 64464.6 |
| tetraacyldisaccharide 4'-kinase | YDC107_RS21485 | Not Available | Positive | 4428029 - 4429015 | 35549.3 |
| crosslink repair dna glycosylase ycaq | YDC107_RS21490 | Not Available | Positive | 4429052 - 4430284 | 47629.6 |
| protein ycar | YDC107_RS21495 | Not Available | Positive | 4430336 - 4430518 | 6855.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





