Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine n1-acetyltransferase | YDC107_RS00490 | Not Available | Positive | 71096 - 71656 | 21902.3 |
| ynfc family lipoprotein | YDC107_RS00495 | Not Available | Negative | 71659 - 72369 | 26507.3 |
| duf1161 domain-containing protein | YDC107_RS00500 | Not Available | Positive | 72477 - 72782 | 10491.3 |
| selenate/tellurate reductase subunit ynfe | YDC107_RS00505 | Not Available | Positive | 72981 - 75407 | 89616.8 |
| selenate/tellurate reductase subunit ynff | YDC107_RS00510 | Not Available | Positive | 75468 - 77891 | 90019.0 |
| dmso reductase like molybdoenzyme iron-sulfur subunit ynfg | YDC107_RS00515 | Not Available | Positive | 77902 - 78519 | 22738.8 |
| selenate reductase membrane anchor subunit ynfh | YDC107_RS00520 | Not Available | Positive | 78521 - 79375 | 30551.5 |
| tat proofreading chaperone dmsd | YDC107_RS00525 | Not Available | Positive | 79418 - 80032 | 23417.9 |
| voltage-gated clc-type chloride channel clcb | YDC107_RS00530 | Not Available | Positive | 80191 - 81483 | 45751.1 |
| dethiobiotin synthase | YDC107_RS00535 | Not Available | Negative | 81436 - 82131 | 24968.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





