Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1418 family protein | YDC107_RS21130 | Not Available | Positive | 4349184 - 4349471 | 10493.4 |
| nitroreductase nfsa | YDC107_RS21135 | Not Available | Positive | 4349455 - 4350177 | 26863.2 |
| 30s ribosomal protein s6--l-glutamate ligase | YDC107_RS21140 | Not Available | Positive | 4350238 - 4351140 | 32438.5 |
| ybjn domain-containing protein | YDC107_RS21145 | Not Available | Positive | 4351228 - 4351704 | 17699.2 |
| spermidine/putrescine abc transporter substrate-binding protein potf | YDC107_RS21150 | Not Available | Positive | 4352055 - 4353167 | 40857.7 |
| putrescine abc transporter atp-binding subunit potg | YDC107_RS21155 | Not Available | Positive | 4353262 - 4354395 | 42055.5 |
| putrescine abc transporter permease poth | YDC107_RS21160 | Not Available | Positive | 4354405 - 4355349 | 35288.5 |
| putrescine abc transporter permease poti | YDC107_RS21165 | Not Available | Positive | 4355346 - 4356191 | 30473.3 |
| ybjo family protein | YDC107_RS21170 | Not Available | Positive | 4356251 - 4356739 | 18519.1 |
| 23s rrna (uracil(747)-c(5))-methyltransferase rlmc | YDC107_RS21175 | Not Available | Positive | 4356780 - 4357907 | 41973.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





