Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional repressor deor | YDC107_RS21080 | Not Available | Negative | 4340248 - 4341006 | 28581.6 |
| undecaprenyl-diphosphate phosphatase | YDC107_RS21085 | Not Available | Negative | 4341064 - 4341660 | 22433.9 |
| multidrug efflux mfs transporter mdfa | YDC107_RS21090 | Not Available | Positive | 4341945 - 4343177 | 44363.9 |
| protein ybjh | YDC107_RS21095 | Not Available | Negative | 4343218 - 4343502 | 9971.24 |
| 5-amino-6-(5-phospho-d-ribitylamino)uracil phosphatase | YDC107_RS21100 | Not Available | Negative | 4343587 - 4344402 | 30306.1 |
| mfs transporter | YDC107_RS21105 | Not Available | Negative | 4344402 - 4345610 | 41855.1 |
| dna-binding transcriptional regulator rcda | YDC107_RS21110 | Not Available | Positive | 4345694 - 4346230 | 20312.6 |
| aspartate:alanine antiporter | YDC107_RS21115 | Not Available | Negative | 4346405 - 4348090 | 60382.1 |
| inner membrane protein ybjm | YDC107_RS21120 | Not Available | Positive | 4348360 - 4348737 | 14204.0 |
| glutaredoxin 1 | YDC107_RS21125 | Not Available | Negative | 4348767 - 4349024 | 9695.39 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





