Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent rna helicase rhle | YDC107_RS20830 | Not Available | Positive | 4283224 - 4284588 | 50006.4 |
| hypothetical protein | YDC107_RS20835 | Not Available | Positive | 4284745 - 4285185 | 16290.2 |
| type ii toxin-antitoxin system mrna interferase toxin, rele/stbe family | YDC107_RS20840 | Not Available | Positive | 4285185 - 4285466 | 10651.8 |
| atp-dependent dna helicase ding | YDC107_RS20845 | Not Available | Positive | 4285637 - 4287787 | 81508.0 |
| dna-binding protein ybib | YDC107_RS20850 | Not Available | Positive | 4287815 - 4288777 | 35059.6 |
| hydroxycarboxylate dehydrogenase hcxb | YDC107_RS20855 | Not Available | Positive | 4288918 - 4290003 | 38919.3 |
| duf1471 family protein ybij | YDC107_RS20860 | Not Available | Negative | 4290142 - 4290402 | 8568.2 |
| c4-type zinc finger protein ybii | YDC107_RS20865 | Not Available | Negative | 4290667 - 4290933 | 9804.42 |
| pkhd-type hydroxylase ybix | YDC107_RS20870 | Not Available | Negative | 4291007 - 4291684 | 25561.3 |
| catecholate siderophore receptor fiu | YDC107_RS20875 | Not Available | Negative | 4291726 - 4294008 | 81904.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





