Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-lys | Not Available | Not Available | Positive | 4233850 - 4233925 | Not Available |
| Ncrna_class:other | Not Available | Not Available | Positive | 4233956 - 4234081 | Not Available |
| quinolinate synthase nada | YDC107_RS20590 | Not Available | Positive | 4234358 - 4235401 | 38203.9 |
| nicotinamide riboside transporter pnuc | YDC107_RS20595 | Not Available | Positive | 4235439 - 4236158 | 26911.7 |
| cdf family zinc transporter zitb | YDC107_RS20600 | Not Available | Negative | 4236155 - 4237096 | 34694.6 |
| ybgs-like family protein | YDC107_RS20605 | Not Available | Negative | 4237210 - 4237590 | 12868.7 |
| 3-deoxy-7-phosphoheptulonate synthase arog | YDC107_RS20610 | Not Available | Positive | 4237905 - 4238957 | 37997.6 |
| 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | YDC107_RS20615 | Not Available | Negative | 4239123 - 4239875 | 28557.9 |
| galactose-1-epimerase | YDC107_RS20620 | Not Available | Negative | 4240078 - 4241118 | 38177.5 |
| galactokinase | YDC107_RS20625 | Not Available | Negative | 4241112 - 4242260 | 41444.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





