Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylaspartate mutase subunit s | YDC107_RS20480 | Not Available | Negative | 4220580 - 4221029 | 16444.7 |
| hypothetical protein | YDC107_RS20485 | Not Available | Negative | 4221576 - 4221998 | 15665.5 |
| hypothetical protein | YDC107_RS20490 | Not Available | Negative | 4222079 - 4223023 | 36339.2 |
| cytochrome ubiquinol oxidase subunit i | YDC107_RS20495 | Not Available | Positive | 4223829 - 4225397 | 58208.4 |
| cytochrome d ubiquinol oxidase subunit ii | YDC107_RS20500 | Not Available | Positive | 4225413 - 4226552 | 42455.6 |
| cytochrome bd-i oxidase subunit cydx | YDC107_RS20505 | Not Available | Positive | 4226567 - 4226680 | 4041.9 |
| cyd operon protein ybge | YDC107_RS20510 | Not Available | Positive | 4226680 - 4226973 | 10933.0 |
| tol-pal system-associated acyl-coa thioesterase | YDC107_RS20515 | Not Available | Positive | 4227123 - 4227527 | 15562.9 |
| tol-pal system protein tolq | YDC107_RS20520 | Not Available | Positive | 4227524 - 4228216 | 25599.2 |
| colicin uptake protein tolr | YDC107_RS20525 | Not Available | Positive | 4228220 - 4228648 | 15383.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





