Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rtcb family protein | YDC107_RS20430 | Not Available | Negative | 4208060 - 4209457 | 51029.2 |
| lysr family transcriptional regulator | YDC107_RS20435 | Not Available | Positive | 4210047 - 4210952 | 34356.4 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | YDC107_RS20440 | Not Available | Negative | 4210986 - 4211588 | 22387.7 |
| class i fumarate hydratase | YDC107_RS20445 | Not Available | Negative | 4211598 - 4213250 | 60066.6 |
| dicarboxylate/amino acid:cation symporter | YDC107_RS20450 | Not Available | Negative | 4213358 - 4214638 | 45218.9 |
| duf4387 domain-containing protein | YDC107_RS20455 | Not Available | Negative | 4214799 - 4215116 | 11912.4 |
| acyclic terpene utilization atua family protein | YDC107_RS20460 | Not Available | Negative | 4215113 - 4216483 | 49089.5 |
| methylaspartate ammonia-lyase | YDC107_RS20465 | Not Available | Negative | 4216487 - 4217728 | 45607.8 |
| methylaspartate mutase subunit e | YDC107_RS20470 | Not Available | Negative | 4217728 - 4219173 | 53140.9 |
| methylaspartate mutase accessory protein glml | YDC107_RS20475 | Not Available | Negative | 4219192 - 4220580 | 50530.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





