Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase membrane anchor subunit | YDC107_RS20380 | Not Available | Positive | 4193145 - 4193492 | 12880.4 |
| succinate dehydrogenase flavoprotein subunit | YDC107_RS20385 | Not Available | Positive | 4193492 - 4195258 | 64425.6 |
| succinate dehydrogenase iron-sulfur subunit sdhb | YDC107_RS20390 | Not Available | Positive | 4195274 - 4195990 | 26771.4 |
| 2-oxoglutarate dehydrogenase e1 component | YDC107_RS20395 | Not Available | Positive | 4196190 - 4198991 | 105053.0 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | YDC107_RS20400 | Not Available | Positive | 4199006 - 4200223 | 44014.0 |
| adp-forming succinate--coa ligase subunit beta | YDC107_RS20405 | Not Available | Positive | 4200317 - 4201483 | 41395.1 |
| succinate--coa ligase subunit alpha | YDC107_RS20410 | Not Available | Positive | 4201483 - 4202352 | 29779.3 |
| mannosyl-d-glycerate transport/metabolism system transcriptional repressor mngr | YDC107_RS20415 | Not Available | Negative | 4202456 - 4203178 | 28265.0 |
| pts 2-o-a-mannosyl-d-glycerate transporter subunit iiabc | YDC107_RS20420 | Not Available | Positive | 4203348 - 4205264 | 66976.7 |
| mannosylglycerate hydrolase | YDC107_RS20425 | Not Available | Positive | 4205282 - 4207915 | 100273.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





