Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ornithine decarboxylase spef | YDC107_RS20230 | Not Available | Negative | 4158941 - 4161139 | 82440.3 |
| leader peptide spefl | YDC107_RS20235 | Not Available | Negative | 4161449 - 4161553 | 4288.17 |
| hypothetical protein | YDC107_RS28810 | Not Available | Negative | 4161532 - 4161666 | 5267.43 |
| two-component system response regulator kdpe | YDC107_RS20245 | Not Available | Negative | 4161828 - 4162505 | 25349.7 |
| two-component system sensor histidine kinase kdpd | YDC107_RS20250 | Not Available | Negative | 4162502 - 4165186 | 98728.2 |
| k(+)-transporting atpase subunit c | YDC107_RS20255 | Not Available | Negative | 4165179 - 4165751 | 20385.5 |
| potassium-transporting atpase subunit kdpb | YDC107_RS20260 | Not Available | Negative | 4165760 - 4167808 | 72124.5 |
| potassium-transporting atpase subunit kdpa | YDC107_RS20265 | Not Available | Negative | 4167831 - 4169504 | 59069.5 |
| k(+)-transporting atpase subunit f | YDC107_RS20270 | Not Available | Negative | 4169504 - 4169593 | 3041.92 |
| ybfa family protein | YDC107_RS20275 | Not Available | Positive | 4169905 - 4170111 | 8289.03 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





