Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cu(+)/ag(+) efflux rnd transporter outer membrane channel cusc | YDC107_RS19675 | Not Available | Positive | 4049314 - 4050696 | 50729.0 |
| cu(+)/ag(+) efflux rnd transporter periplasmic metallochaperone cusf | YDC107_RS19680 | Not Available | Positive | 4050720 - 4051052 | 12235.8 |
| cu(+)/ag(+) efflux rnd transporter periplasmic adaptor subunit cusb | YDC107_RS19685 | Not Available | Positive | 4051068 - 4052291 | 44379.5 |
| cu(+)/ag(+) efflux rnd transporter permease subunit cusa | YDC107_RS19690 | Not Available | Positive | 4052303 - 4055446 | 114746.0 |
| phenylalanine transporter | YDC107_RS19695 | Not Available | Positive | 4055548 - 4056924 | 50648.3 |
| mechanosensitive ion channel ybdg | YDC107_RS19700 | Not Available | Negative | 4056992 - 4058239 | 46639.5 |
| oxygen-insensitive nad(p)h nitroreductase | YDC107_RS19705 | Not Available | Negative | 4058347 - 4059000 | 23935.4 |
| mmcq/yjbr family dna-binding protein | YDC107_RS19710 | Not Available | Negative | 4059094 - 4059462 | 14051.1 |
| duf1158 domain-containing protein | YDC107_RS19715 | Not Available | Negative | 4059527 - 4059775 | 9434.09 |
| ybdk family carboxylate-amine ligase | YDC107_RS19720 | Not Available | Negative | 4059841 - 4060959 | 41710.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





