Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| (s)-ureidoglycine aminohydrolase | YDC107_RS19475 | Not Available | Negative | 4004330 - 4005115 | 28750.0 |
| allantoate deiminase | YDC107_RS19480 | Not Available | Negative | 4005126 - 4006361 | 45618.5 |
| s49 family peptidase | YDC107_RS19485 | Not Available | Negative | 4006383 - 4007432 | 37721.1 |
| acyl-coa synthetase fdra | YDC107_RS19490 | Not Available | Positive | 4007749 - 4009416 | 58518.4 |
| duf1116 domain-containing protein | YDC107_RS19495 | Not Available | Positive | 4009426 - 4010685 | 44980.7 |
| duf2877 domain-containing protein | YDC107_RS19500 | Not Available | Positive | 4010696 - 4011511 | 29648.9 |
| carbamate kinase | YDC107_RS19505 | Not Available | Positive | 4011508 - 4012401 | 31637.1 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | YDC107_RS19510 | Not Available | Negative | 4012554 - 4013621 | 39436.4 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | YDC107_RS19515 | Not Available | Negative | 4013618 - 4014127 | 17781.3 |
| udp-2,3-diacylglucosamine diphosphatase | YDC107_RS19520 | Not Available | Negative | 4014244 - 4014966 | 26867.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





