Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional activator alls | YDC107_RS19425 | Not Available | Negative | 3992460 - 3993386 | 34513.6 |
| ureidoglycolate lyase | YDC107_RS19430 | Not Available | Positive | 3993616 - 3994098 | 18223.6 |
| hth-type transcriptional repressor allr | YDC107_RS19435 | Not Available | Positive | 3994176 - 3994991 | 29271.4 |
| glyoxylate carboligase | YDC107_RS19440 | Not Available | Positive | 3995081 - 3996862 | 64764.5 |
| hydroxypyruvate isomerase | YDC107_RS19445 | Not Available | Positive | 3996875 - 3997651 | 29357.0 |
| 2-hydroxy-3-oxopropionate reductase | YDC107_RS19450 | Not Available | Positive | 3997751 - 3998629 | 30787.5 |
| allantoin transporter | YDC107_RS19455 | Not Available | Positive | 3998799 - 4000253 | 52435.2 |
| allantoinase allb | YDC107_RS19460 | Not Available | Positive | 4000314 - 4001675 | 49549.4 |
| uracil/xanthine transporter | YDC107_RS19465 | Not Available | Positive | 4001732 - 4003033 | 47242.2 |
| glycerate 3-kinase | YDC107_RS19470 | Not Available | Positive | 4003055 - 4004200 | 38862.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





