Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chaperedoxin | YDC107_RS19370 | Not Available | Negative | 3979011 - 3979865 | 31762.9 |
| nadp(+)-dependent aldehyde reductase | YDC107_RS19375 | Not Available | Negative | 3979926 - 3980735 | 29412.0 |
| multifunctional acyl-coa thioesterase i/protease i/lysophospholipase l1 | YDC107_RS19380 | Not Available | Negative | 3980725 - 3981348 | 23492.3 |
| putative abc transporter atp-binding protein ybba | YDC107_RS19385 | Not Available | Positive | 3981319 - 3982005 | 24534.5 |
| putative abc transporter permease subunit ybbp | YDC107_RS19390 | Not Available | Positive | 3982002 - 3984416 | 89467.6 |
| s49 family peptidase | YDC107_RS19395 | Not Available | Positive | 3984845 - 3988972 | 154814.0 |
| is1 family transposase | YDC107_RS19400 | Not Available | Positive | 3989023 - 3989720 | 26631.4 |
| hypothetical protein | YDC107_RS19410 | Not Available | Positive | 3989804 - 3990295 | 18385.1 |
| s49 family peptidase | YDC107_RS19415 | Not Available | Negative | 3990816 - 3991181 | 13797.5 |
| trna 2-selenouridine(34) synthase mnmh | YDC107_RS19420 | Not Available | Negative | 3991297 - 3992391 | 41198.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





