Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail component | YDC107_RS00185 | Not Available | Negative | 33041 - 33780 | 26418.9 |
| Tail component | YDC107_RS00195 | Not Available | Negative | 33788 - 34183 | 14704.0 |
| Tail component | YDC107_RS00200 | Not Available | Negative | 34180 - 34758 | 21562.0 |
| head-tail joining protein | YDC107_RS00205 | Not Available | Negative | 34770 - 35121 | 12068.8 |
| Dna packaging protein | YDC107_RS00210 | Not Available | Negative | 35133 - 35402 | 9592.75 |
| Dna packaging protein | YDC107_RS28610 | Not Available | Negative | 35347 - 35493 | 5182.98 |
| Capsid component | YDC107_RS00215 | Not Available | Negative | 35567 - 36591 | 38262.8 |
| Head-dna stabilization protein | YDC107_RS00220 | Not Available | Negative | 36646 - 36978 | 11557.5 |
| Capsid component | YDC107_RS00225 | Not Available | Negative | 36988 - 38307 | 45933.4 |
| Capsid component | YDC107_RS00230 | Not Available | Negative | 38288 - 39889 | 59386.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





