Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome o ubiquinol oxidase subunit iii | YDC107_RS19015 | Not Available | Negative | 3880431 - 3881045 | 22624.0 |
| cytochrome o ubiquinol oxidase subunit i | YDC107_RS19020 | Not Available | Negative | 3881035 - 3883026 | 74372.2 |
| cytochrome o ubiquinol oxidase subunit ii | YDC107_RS19025 | Not Available | Negative | 3883048 - 3883995 | 34913.2 |
| muropeptide mfs transporter ampg | YDC107_RS19030 | Not Available | Negative | 3884455 - 3885930 | 53320.4 |
| lipoprotein | YDC107_RS19035 | Not Available | Negative | 3885974 - 3886552 | 20969.3 |
| transcriptional regulator bola | YDC107_RS19040 | Not Available | Positive | 3886857 - 3887174 | 11994.3 |
| trigger factor | YDC107_RS19045 | Not Available | Positive | 3887518 - 3888816 | 48195.4 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | YDC107_RS19050 | Not Available | Positive | 3889062 - 3889685 | 23188.1 |
| atp-dependent protease atp-binding subunit clpx | YDC107_RS19055 | Not Available | Positive | 3889811 - 3891085 | 46358.7 |
| endopeptidase la | YDC107_RS19060 | Not Available | Positive | 3891273 - 3893627 | 87443.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





