Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-deoxy-d-xylulose-5-phosphate synthase | YDC107_RS18965 | Not Available | Negative | 3870700 - 3872562 | 67606.9 |
| (2e,6e)-farnesyl diphosphate synthase | YDC107_RS18970 | Not Available | Negative | 3872587 - 3873486 | 32161.5 |
| exodeoxyribonuclease vii small subunit | YDC107_RS18975 | Not Available | Negative | 3873486 - 3873728 | 8952.42 |
| trna uracil 4-sulfurtransferase thii | YDC107_RS18980 | Not Available | Positive | 3873934 - 3875382 | 54962.3 |
| protein deglycase yajl | YDC107_RS18985 | Not Available | Negative | 3875436 - 3876026 | 20807.3 |
| 2-dehydropantoate 2-reductase | YDC107_RS18990 | Not Available | Negative | 3875989 - 3876900 | 33858.7 |
| nucleotide binding protein yajq | YDC107_RS18995 | Not Available | Positive | 3877068 - 3877559 | 18344.9 |
| mfs transporter | YDC107_RS19000 | Not Available | Negative | 3877687 - 3879051 | 48698.8 |
| heme o synthase | YDC107_RS19005 | Not Available | Negative | 3879200 - 3880090 | 32319.5 |
| cytochrome o ubiquinol oxidase subunit iv | YDC107_RS19010 | Not Available | Negative | 3880102 - 3880431 | 12030.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





