Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter atp-binding protein | YDC107_RS18460 | Not Available | Positive | 3768229 - 3769713 | 54438.1 |
| abc transporter permease | YDC107_RS18465 | Not Available | Positive | 3769706 - 3770677 | 34883.7 |
| abc transporter permease | YDC107_RS18470 | Not Available | Positive | 3770674 - 3771630 | 33771.8 |
| nadph-dependent aldehyde reductase yahk | YDC107_RS18475 | Not Available | Positive | 3771717 - 3772766 | 38033.7 |
| protein yahl | YDC107_RS18480 | Not Available | Positive | 3773009 - 3773824 | 31786.4 |
| Trna-pseudo | Not Available | Not Available | Positive | 3774167 - 3774247 | Not Available |
| protein yahm | YDC107_RS18485 | Not Available | Positive | 3774237 - 3774482 | 8848.02 |
| lyse family transporter | YDC107_RS18490 | Not Available | Negative | 3774499 - 3775170 | 24825.8 |
| duf1471 family periplasmic protein yaho | YDC107_RS18495 | Not Available | Positive | 3775317 - 3775592 | 9929.94 |
| propionate catabolism operon regulatory protein prpr | YDC107_RS18500 | Not Available | Negative | 3775693 - 3777279 | 58674.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





