Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | YDC107_RS18050 | Not Available | Positive | 3680280 - 3680603 | 11997.5 |
| mfs transporter | YDC107_RS18055 | Not Available | Positive | 3680969 - 3682483 | 57351.6 |
| right-handed parallel beta-helix repeat-containing protein | YDC107_RS18060 | Not Available | Positive | 3682485 - 3684719 | 82994.0 |
| hypothetical protein | YDC107_RS18065 | Not Available | Positive | 3684827 - 3685792 | 38193.0 |
| cpbp family intramembrane glutamic endopeptidase | YDC107_RS18070 | Not Available | Negative | 3686103 - 3686456 | 13747.2 |
| is5-like element iskpn26 family transposase | YDC107_RS18080 | Not Available | Positive | 3686739 - 3687719 | 37706.5 |
| hypothetical protein | YDC107_RS28785 | Not Available | Positive | 3687701 - 3687892 | 6988.52 |
| s49 family peptidase | YDC107_RS18085 | Not Available | Negative | 3687867 - 3690982 | 117389.0 |
| restriction endonuclease subunit s | YDC107_RS18090 | Not Available | Negative | 3691104 - 3692318 | 46012.9 |
| type i restriction-modification system subunit m | YDC107_RS18095 | Not Available | Negative | 3692315 - 3693871 | 57816.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





