Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein ykfm | YDC107_RS17690 | Not Available | Negative | 3601987 - 3602454 | 17688.2 |
| hypothetical protein | YDC107_RS17695 | Not Available | Negative | 3602464 - 3603378 | 34000.4 |
| hcp family type vi secretion system effector | YDC107_RS17700 | Not Available | Negative | 3603422 - 3603904 | 18078.6 |
| s49 family peptidase | YDC107_RS17705 | Not Available | Negative | 3603831 - 3605280 | 54337.1 |
| type vi secretion system membrane subunit tssm | YDC107_RS17710 | Not Available | Negative | 3605291 - 3608725 | 130879.0 |
| type vi secretion system protein tssa | YDC107_RS17715 | Not Available | Negative | 3608834 - 3610246 | 52281.0 |
| type vi secretion system-associated protein vasi | YDC107_RS17720 | Not Available | Negative | 3610251 - 3610994 | 26423.7 |
| aaa family atpase | YDC107_RS17725 | Not Available | Negative | 3610991 - 3613924 | 107016.0 |
| type ivb secretion system protein icmh/dotu | YDC107_RS17730 | Not Available | Negative | 3613933 - 3614694 | 29373.7 |
| type vi secretion system baseplate subunit tssk | YDC107_RS17735 | Not Available | Negative | 3614699 - 3616030 | 49965.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





